Understanding EIS Loss Protection: A Complete Guide to Investor Risk Exposure
- Marcel Shackleton
- Jul 15
- 3 min read

Introduction
The Enterprise Investment Scheme (EIS) and Seed Enterprise Investment Scheme (SEIS) offer significant tax advantages to investors willing to back early-stage UK companies.
However, if one of these investments fails, understanding the loss protection mechanisms becomes crucial for calculating your true risk exposure. This guide examines how loss relief works and provides practical examples of different investor scenarios.
How EIS Loss Protection Works
Initial Tax Relief
- EIS: 30% income tax relief on investments up to £1 million annually
- SEIS: 50% income tax relief on investments up to £100,000 annually
Loss Relief Mechanism
If an EIS or SEIS investment fails, investors can claim loss relief on their net investment (the amount actually at risk after initial tax relief). This loss relief is calculated at the investor's marginal rate of income tax.
Key Point: Loss relief applies to the net amount invested (original investment minus initial tax relief), not the gross investment amount.
Practical Examples
Scenario 1: SEIS Investor (Highest Protection)
Assumptions:
- £100,000 original investment
- Higher rate taxpayer (40%)
- 50% SEIS income tax relief
Calculation:
1. SEIS relief: £100,000 × 50% = £50,000
2. Net investment at risk: £100,000 - £50,000 = £50,000
3. Loss relief (if company fails): £50,000 × 40% = £20,000
4. Total protection: £50,000 + £20,000 = £70,000
5. Net exposure: £30,000 (30% of original investment)
Scenario 2: EIS Investor - Higher Rate Taxpayer
Assumptions:
- £100,000 original investment
- Higher rate taxpayer (40%)
- 30% EIS income tax relief
Calculation:
1. EIS relief: £100,000 × 30% = £30,000
2. Net investment at risk: £100,000 - £30,000 = £70,000
3. Loss relief (if company fails): £70,000 × 40% = £28,000
4. Total protection: £30,000 + £28,000 = £58,000
5. Net exposure: £42,000 (42% of original investment)
Scenario 3: EIS Investor - Basic Rate Taxpayer (Lowest Protection)
Assumptions:
- £100,000 original investment
- Basic rate taxpayer (20%)
- 30% EIS income tax relief
Calculation:
1. EIS relief: £100,000 × 30% = £30,000
2. Net investment at risk: £100,000 - £30,000 = £70,000
3. Loss relief (if company fails): £70,000 × 20% = £14,000
4. Total protection: £30,000 + £14,000 = £44,000
5. Net exposure: £56,000 (56% of original investment)
Key Considerations
Timing Requirements
- Holding Period: EIS shares must be held for at least 3 years; SEIS shares for at least 3 years
- Claim Deadline: Loss relief claims must be made within specific timeframes after the loss crystallises
Capital Gains Tax Benefits
Both schemes also offer:
- CGT Deferral: Capital gains can be deferred when reinvested
- CGT Exemption: No CGT on gains from successful EIS/SEIS investments (if held for minimum period)
Strategic Implications
For Higher Rate Taxpayers
- SEIS offers superior protection (30% exposure vs 42% for EIS)
- Consider SEIS allocation before EIS for maximum protection
- Loss relief at 40% provides substantial downside protection
For Basic Rate Taxpayers
- EIS still provides meaningful protection (44% total relief)
- Consider the 56% net exposure when sizing investments
- May benefit from income growth to higher rate bracket
Conclusion
Understanding EIS loss protection is essential for making informed investment decisions. While SEIS offers the highest level of protection with only 30% net exposure for higher rate taxpayers, even basic rate EIS investors benefit from substantial downside protection. The key is recognising that your true risk exposure is significantly lower than your initial investment amount.
Remember: these calculations assume complete loss of investment. Partial recoveries would reduce the actual loss and improve overall returns.
This article provides general guidance based on current tax legislation. Individual circumstances may vary, and professional tax advice should be sought for specific situations.
Official Sources
This information is based on current HMRC guidance available at:
- Enterprise Investment Scheme Income Tax Relief (HS341)
- EIS Statistics 2025 https://www.gov.uk/government/statistics/enterprise-investment-scheme-seed-enterprise-investment-scheme-and-social-investment-tax-relief-may-2025




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